Web lists-archives.com

Bug#922703: ITP: kma -- mapping genomic sequences to raw reads directly against redundant databases




Package: wnpp
Severity: wishlist
Owner: Andreas Tille <tille@xxxxxxxxxx>

* Package name    : kma
  Version         : 1.1.7
  Upstream Author : , Philip Clausen, Technical University of Denmark
* URL             : https://bitbucket.org/genomicepidemiology/kma
* License         : Apache-2.0
  Programming Lang: C
  Description     : mapping genomic sequences to raw reads directly against redundant databases
 KMA is mapping a method designed to map raw reads directly against
 redundant databases, in an ultra-fast manner using seed and extend. KMA
 is particularly good at aligning high quality reads against highly
 redundant databases, where unique matches often does not exist. It works
 for long low quality reads as well, such as those from Nanopore. Non-
 unique matches are resolved using the "ConClave" sorting scheme, and a
 consensus sequence are outputtet in addition to other common attributes.

Remark: This package is maintained by Debian Med Packaging Team at
   https://salsa.debian.org/med-team/kma