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Bug#913826: ITP: presto -- high-throughput lymphocyte receptor sequences processing




Package: wnpp
Severity: wishlist
Owner: Steffen Moeller <moeller@xxxxxxxxxx>

* Package name    : presto
  Version         : 0.5.2
* URL             : https://pypi.org/project/presto/
* License         : MIT
  Programming Lang: Python
  Description     : high-throughput lymphocyte receptor sequences processing



pRESTO is a toolkit for processing raw reads from high-throughput
sequencing of B cell and T cell repertoires.

Dramatic improvements in high-throughput sequencing technologies now enable large-scale characterization of lymphocyte repertoires, defined as the collection of trans-membrane antigen-receptor proteins located on the surface of B cells and T cells. The REpertoire Sequencing TOolkit (pRESTO) is composed of a suite of utilities to handle all stages of sequence processing prior to germline segment assignment. pRESTO is designed to handle either single reads or paired-end reads. It includes features for quality control, primer masking, annotation of reads with sequence embedded barcodes, generation of unique molecular identifier (UMI) consensus sequences, assembly of paired-end reads and identification of duplicate sequences. Numerous options for sequence sorting, sampling and conversion operations are also included.

The package is about it appear on https://salsa.debian.org/python-team/modules/presto