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Bug#911964: ITP: plasmidseeker -- identification of known plasmids from whole-genome sequencing reads




Package: wnpp
Severity: wishlist
Owner: Andreas Tille <tille@xxxxxxxxxx>

* Package name    : plasmidseeker
  Version         : 1.0
  Upstream Author : Bioinfo, IMCB, UT
* URL             : https://github.com/bioinfo-ut/PlasmidSeeker
* License         : BSD-3-clause
  Programming Lang: Perl
  Description     : identification of known plasmids from whole-genome sequencing reads
 PlasmidSeeker is a k-mer based program for the identification of known
 plasmids from bacterial whole genome sequencing reads.
 .
 PlasmidSeeker that enables the detection of plasmids from bacterial WGS
 data without read assembly. The PlasmidSeeker algorithm is based on
 k-mers and uses k-mer abundance to distinguish between plasmid and
 bacterial sequences. The performance of PlasmidSeeker was tested on a set
 of simulated and real bacterial WGS samples, resulting in 100%
 sensitivity and 99.98% specificity.

Remark: This package is maintained by Debian Med Packaging Team at
   https://salsa.debian.org/med-team/plasmidseeker