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Bug#907690: ITP: elph -- DNA/protein sequence motif finder




Package: wnpp
Severity: wishlist
Owner: Steffen Moeller <moeller@xxxxxxxxxx>

* Package name    : elph
  Version         : 1.0.1
* URL             : http://www.cbcb.umd.edu/software/ELPH/
* License         : Artistic
  Programming Lang: C++
  Description     : DNA/protein sequence motif finder

 ELPH (Estimated Locations of Pattern Hits) is a general-purpose
 Gibbs sampler for finding motifs in a set of DNA or protein sequences.
 The program takes as input a set containing anywhere from a few dozen to
 thousands of sequences, and searches through them for the most common
 motif, assuming that each sequence contains one copy of the motif. We
 have used ELPH to find patterns such as ribosome binding sites (RBSs)
 and exon splicing enhancers (ESEs).

 The package is team maintained and due to appear on
 https://salsa.debian.org/med-team/elph.