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Bug#892522: ITP: r-bioc-bitseq -- transcript expression inference and analysis for RNA-seq data




Package: wnpp
Severity: wishlist
Owner: Andreas Tille <tille@xxxxxxxxxx>

* Package name    : r-bioc-bitseq
  Version         : 1.22.0
  Upstream Author : Peter Glaus, Antti Honkela and Magnus Rattray
* URL             : https://bioconductor.org/packages/BitSeq/
* License         : Artistic-2.0
  Programming Lang: GNU R
  Description     : transcript expression inference and analysis for RNA-seq data
 The BitSeq package is targeted for transcript expression
 analysis and differential expression analysis of RNA-seq data
 in two stage process. In the first stage it uses Bayesian
 inference methodology to infer expression of individual
 transcripts from individual RNA-seq experiments. The second
 stage of BitSeq embraces the differential expression analysis
 of transcript expression. Providing expression estimates from
 replicates of multiple conditions, Log-Normal model of the
 estimates is used for inferring the condition mean transcript
 expression and ranking the transcripts based on the likelihood
 of differential expression.


Remark: This package is needed in BioLinux and thus a sensible target for
the Debian Med team.  The actual packaging will be done by the r-pkg team
at
    https://salsa.debian.org/r-pkg-team/r-bioc-bitseq