Web lists-archives.com

Bug#855211: ITP: qcumber -- quality control of genomic sequences




Package: wnpp
Severity: wishlist
Owner: Andreas Tille <tille@xxxxxxxxxx>

* Package name    : qcumber
  Version         : 1.0.5
  Upstream Author : Vivi Lieu <LieuV@xxxxxx>
* URL             : https://gitlab.com/RKIBioinformaticsPipelines/QCumber
* License         : LGPL
  Programming Lang: Python
  Description     : quality control of genomic sequences
 QCPipeline is a tool for quality control. The workflow is as follows:
 .
  1. Quality control with FastQC
  2. Trim Reads with Trimmomatic
  3. Quality control of trimmed reads with FastQC
  4. Map reads against reference using bowtie2
  5. Classify reads with Kraken